http://hdl.handle.net/10900/142556 2026-05-13T12:59:44Z 2026-05-13T12:59:44Z Zinn, Claus http://hdl.handle.net/10900/145282 2023-09-06T05:11:16Z 2023-09-05T00:00:00Z

Ein minimales Metadatenschema für BioDATEN Zinn, Claus The annotation of metadata to enable FAIR research data management can be a tedious and time-consuming activity. To reduce this burden the SDC BioDATEN created a minimal metadata schema to collect the information necessary to publish research data and to improve findability. Besides this aspect, the developed schema supports the annotation and connection of multiple samples with multiple methods. Thus, the schema offers flexibility while reducing the overall burden of metadata annotation. The slides demonstrate and explain the approach and provide further details.

2023-09-05T00:00:00Z Gauza, Holger http://hdl.handle.net/10900/145281 2023-09-06T05:13:08Z 2023-09-05T00:00:00Z

SDC BioDATEN - Final workshop Gauza, Holger The SDC BioDATEN was mainly active between 01.07.2019 - 30.06.2023. The key results are the strengthening of Baden-Württemberg as an excellent research location by kick-starting various NFDI consortia. The BioDATEN community was also active and involved in several national and international conferences and workshops. BioDATEN supported a sustainable approach that combined available infrastructure and resources such as de.NBI Cloud, bwHPC, and bwSFS with tools, frameworks, and other assets provided by the project partners. In this way, products created by and within BioDATEN can be handed to other communities. The slides serve as a summary of the project activities and highlight the overall project and team work.

2023-09-05T00:00:00Z Kaltenbach, Jan http://hdl.handle.net/10900/145280 2023-09-06T05:14:42Z 2023-09-05T00:00:00Z

Metadaten Harvesting und Annotation Kaltenbach, Jan Metadata are crucial in making research data FAIR. But they must be provided by the researchers. During the project duration, BioDATEN developed an annotation tool that uses XML files as input and provides web-based HTML forms as output that can be populated by the researchers. As the input are XML files, the foundation for input validation is already integrated. This in combination with integrated look-up services for terms help to improve the overall metadata quality. At the same time, the tool is sensitive to previous inputs and displays metadata fields only if they make sense in the context provided. The slides summarize the functions of the tool and provide links to further resources. Additionally, the slides also address metadata harvesting to implement a cross-repository and cross-omics search functionality.

2023-09-05T00:00:00Z Bauer, Jonathan http://hdl.handle.net/10900/145279 2023-09-06T05:15:42Z 2023-09-05T00:00:00Z

Research Data Publication using InvenioRDM Bauer, Jonathan At the end of the research data management life cycle, data should be published and open for re-use. While there are several discipline-specific repositories, there is the need for generic data publication platforms as well. To reduce the burden of maintaining several generic repositories, BioDATEN implemented InvenioRDM which allows for several communities with specific guidelines and curation workflows. Within a community, data stewards can review data submitted for publication and approve or reject them. Thus, a quality control mechanism is in place. InvenioRDM provides a DataCite integration that allows for DOI registration which in turn makes data as citeable as journal publications. This is also a step towards FAIR research data. The slides provide details about InvenioRMD, the implementation, and organisational challenges.

2023-09-05T00:00:00Z